Bwera Secondary school was initiated by the parents of kitalikibi primary school (Bwera primary school) under the auspices of Bwera Church of Uganda Archdeaconry of South Rwenzori diocese in Kasese district. The PTA executive led by Mzee Zakaliya Kule Sekalombi and the headtecher kitalikibi primary school then Mr. Muliwabyo Elisha organized pre-Secondary school meetings to prepare for the school to take off.Kitalikibi primary school offered the initial 10 acres of land on which the school stands today. The parents of kitalikibi primary school wanted to establish a secondary school that would be second to none in western Uganda.